Cerebral microbleeds (CMB) are deposits of blood that accumulate within the brain. An increase in CMBs is associated with an increased risk of cognitive impairment and stroke. The types of vessels associated with CMB formation remains unclear. We recently demonstrated the combined use of exogenous labels, vessel painting, and optical clearing to achieve three-dimensional views of blood vessels and CMBs. Here, we aimed to characterize brain vasculature by quantifying key vasculature-related metrics. An automated algorithm was developed to segment blood vessels within fluorescence images. An open-source neuron tracing software, neuTube, was then used to quantify blood vessel diameters.
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