Magnetic resonance imaging (MRI) has potential benefits in understanding fetal and placental complications in pregnancy. An accurate segmentation of the uterine cavity and placenta can help facilitate fast and automated analyses of placenta accreta spectrum and other pregnancy complications. In this study, we trained a deep neural network for fully automatic segmentation of the uterine cavity and placenta from MR images of pregnant women with and without placental abnormalities. The two datasets were axial MRI data of 241 pregnant women, among whom, 101 patients also had sagittal MRI data. Our trained model was able to perform fully automatic 3D segmentation of MR image volumes and achieved an average Dice similarity coefficient (DSC) of 92% for uterine cavity and of 82% for placenta on the sagittal dataset and an average DSC of 87% for uterine cavity and of 82% for placenta on the axial dataset. Use of our automatic segmentation method is the first step in designing an analyticstool for to assess the risk of pregnant women with placenta accreta spectrum.
Magnetic resonance imaging (MRI) has gained popularity in the field of prenatal imaging due to the ability to provide high quality images of soft tissue. In this paper, we presented a novel method for extracting different textural and morphological features of the placenta from MRI volumes using topographical mapping. We proposed polar and planar topographical mapping methods to produce common placental features from a unique point of observation. The features extracted from the images included the entire placenta surface, as well as the thickness, intensity, and entropy maps displayed in a convenient two-dimensional format. The topography-based images may be useful for clinical placental assessments as well as computer-assisted diagnosis, and prediction of potential pregnancy complications.
In severe cases, placenta accreta spectrum (PAS) requires emergency hysterectomy, endangering the life of both mother and fetus. Early prediction may reduce complications and aid in management decisions in these high-risk pregnancies. In this work, we developed a novel convolutional network architecture to combine MRI volumes, radiomic features, and custom feature maps to predict PAS severe enough to result in hysterectomy after fetal delivery in pregnant women. We trained, optimized, and evaluated the networks using data from 241 patients, in groups of 157, 24, and 60 for training, validation, and testing, respectively. We found the network using all three paths produced the best performance, with an AUC of 87.8, accuracy 83.3%,sensitivity of 85.0, and specificity of 82.5. This deep learning algorithm, deployed in clinical settings, may identify women at risk before birth, resulting in improved patient outcomes.
Magnetic resonance imaging (MRI) is useful for the detection of abnormalities affecting maternal and fetal health. In this study, we used a fully convolutional neural network for simultaneous segmentation of the uterine cavity and placenta on MR images. We trained the network with MR images of 181 patients, with 157 for training and 24 for validation. The segmentation performance of the algorithm was evaluated using MR images of 60 additional patients that were not involved in training. The average Dice similarity coefficients achieved for the uterine cavity and placenta were 92% and 80%, respectively. The algorithm could estimate the volume of the uterine cavity and placenta with average errors of less than 1.1% compared to manual estimations. Automated segmentation, when incorporated into clinical use, has the potential to quantify, standardize, and improve placental assessment, resulting in improved outcomes for mothers and fetuses.
In women with placenta accreta spectrum (PAS), patient management may involve cesarean hysterectomy at delivery. Magnetic resonance imaging (MRI) has been used for further evaluation of PAS and surgical planning. This work tackles two prediction problems: predicting presence of PAS and predicting hysterectomy using MR images of pregnant patients. First, we extracted approximately 2,500 radiomic features from MR images with two regions of interest: the placenta and the uterus. In addition to analyzing two regions of interest, we dilated the placenta and uterus masks by 5, 10, 15, and 20 mm to gain insights from the myometrium, where the uterus and placenta overlap in the case of PAS. This study cohort includes 241 pregnant women. Of these women, 89 underwent hysterectomy while 152 did not; 141 with suspected PAS, and 100 without suspected PAS. We obtained an accuracy of 0.88 for predicting hysterectomy and an accuracy of 0.92 for classifying suspected PAS. The radiomic analysis tool is further validated, it can be useful for aiding clinicians in decision making on the care of pregnant women.
KEYWORDS: Image segmentation, Magnetic resonance imaging, Uterus, 3D image processing, 3D modeling, Data modeling, Solids, Image processing algorithms and systems, Fetus, Convolutional neural networks
Purpose: Magnetic resonance imaging has been recently used to examine the abnormalities of the placenta during pregnancy. Segmentation of the placenta and uterine cavity allows quantitative measures and further analyses of the organs. The objective of this study is to develop a segmentation method with minimal user interaction.
Approach: We developed a fully convolutional neural network (CNN) for simultaneous segmentation of the uterine cavity and placenta in three dimensions (3D) while a minimal operator interaction was incorporated for training and testing of the network. The user interaction guided the network to localize the placenta more accurately. In the experiments, we trained two CNNs, one using 70 normal training cases and the other using 129 training cases including normal cases as well as cases with suspected placenta accreta spectrum (PAS). We evaluated the performance of the segmentation algorithms on two test sets: one with 20 normal cases and the other with 50 images from both normal women and women with suspected PAS.
Results: For the normal test data, the average Dice similarity coefficient (DSC) was 92% and 82% for the uterine cavity and placenta, respectively. For the combination of normal and abnormal cases, the DSC was 88% and 83% for the uterine cavity and placenta, respectively. The 3D segmentation algorithm estimated the volume of the normal and abnormal uterine cavity and placenta with average volume estimation errors of 4% and 9%, respectively.
Conclusions: The deep learning-based segmentation method provides a useful tool for volume estimation and analysis of the placenta and uterus cavity in human placental imaging.
A Deep-Learning (DL) based segmentation tool was applied to a new magnetic resonance imaging dataset of pregnant women with suspected Placenta Accreta Spectrum (PAS). Radiomic features from DL segmentation were compared to those from expert manual segmentation via intraclass correlation coefficients (ICC) to assess reproducibility. An additional imaging marker quantifying the placental location within the uterus (PLU) was included. Features with an ICC < 0.7 were used to build logistic regression models to predict hysterectomy. Of 2059 features, 781 (37.9%) had ICC <0.7. AUC was 0.69 (95% CI 0.63-0.74) for manually segmented data and 0.78 (95% CI 0.73-0.83) for DL segmented data.
KEYWORDS: Image segmentation, Magnetic resonance imaging, Uterus, 3D image processing, Convolutional neural networks, Fetus, 3D modeling, Image processing algorithms and systems
Segmentation of the uterine cavity and placenta in fetal magnetic resonance (MR) imaging is useful for the detection of abnormalities that affect maternal and fetal health. In this study, we used a fully convolutional neural network for 3D segmentation of the uterine cavity and placenta while a minimal operator interaction was incorporated for training and testing the network. The user interaction guided the network to localize the placenta more accurately. We trained the network with 70 training and 10 validation MRI cases and evaluated the algorithm segmentation performance using 20 cases. The average Dice similarity coefficient was 92% and 82% for the uterine cavity and placenta, respectively. The algorithm could estimate the volume of the uterine cavity and placenta with average errors of 2% and 9%, respectively. The results demonstrate that the deep learning-based segmentation and volume estimation is possible and can potentially be useful for clinical applications of human placental imaging.
Controlled release of ATP can be used for understanding extracellular purinergic signaling. While coarse
mechanical forces and hypotonic stimulation have been utilized in the past to initiate ATP release from cells,
these methods are neither spatially accurate nor temporally precise. Further, these methods cannot be utilized
in a highly effective cell-specific manner. To mitigate the uncertainties regarding cellular-specificity and
spatio-temporal release of ATP, we herein demonstrate use of optogenetics for ATP release. ATP release in
response to optogenetic stimulation was monitored by Luciferin-Luciferase assay (North American firefly,
photinus pyralis) using luminometer as well as mesoscopic bioluminescence imaging. Our result
demonstrates repetitive release of ATP subsequent to optogenetic stimulation. It is thus feasible that
purinergic signaling can be directly detected via imaging if the stimulus can be confined to single cell or in a
spatially-defined group of cells. This study opens up new avenue to interrogate the mechanisms of purinergic
signaling.
This work is concerned with the numerical implementation of a reconstruction algorithm developed to recover a function
from its spherical means over spheres centered on a circle. The algorithm is experimentally verified by simulations using
numerical phantoms. In the scheme of tomography, acoustic waves are generated by illuminating an object with a short
burst of radio-frequency waves. In applications, like breast cancer imaging, which use modalities like photo-acoustic
tomography (PAT) that model the acoustic pressures as spherical means, data are measured on the detectors located in a
circle surrounding the object. This is then used to reconstruct the absorption density inside the object. In contrast,
applications like bore hole tomography and improved Intravascular Ultra Sound (IVUS) imaging for prostate cancer,
which use modalities like Radial Reflection Diffraction Tomography (RRDT), a ring of detectors placed exterior to the
object, collect the acoustic waves as back-scattered field. This work uses a single algorithm to reconstruct functions from
data collected using these two different techniques - one, by placing the object inside the ring of detectors, and the other,
by placing the object exterior to the ring of detectors. The algorithm then draws a comparison between the two
reconstructions. The case of bistatic ultrasound imaging, where the elliptical Radon transform is appropriate, is also
discussed.
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