Journal of Biomedical Optics
VOL. 13 · NO. 3 | May 2008
CONTENTS
JBO Letters
Caitlin O'Connell-Rodwell, Mark Mackanos, Dmitrii Simanovski, Yu-An Cao, Michael Bachmann, H. Alan Schwettman, Christopher Contag
Journal of Biomedical Optics, Vol. 13, Issue 03, 030501, (May 2008) https://doi.org/10.1117/1.2904665
Open Access
TOPICS: Tissues, In vivo imaging, Proteins, Gas lasers, Pulsed laser operation, Injuries, Skin, Bioluminescence, Carbon monoxide, Laser applications
Mohammed Rahman, Pankaj Chaturvedi, Anne Gillenwater, Rebecca Richards-Kortum
Journal of Biomedical Optics, Vol. 13, Issue 03, 030502, (May 2008) https://doi.org/10.1117/1.2907455
Open Access
TOPICS: Cancer, Luminescence, Imaging systems, Tissues, Reflectivity, Headlamps, Light emitting diodes, Cameras, Visualization, Surgery
Hoi-Ying Holman, Kathy Bjornstad, Michael Martin, Wayne McKinney, Eleanor Blakely, Francis Blankenberg M.D.
Journal of Biomedical Optics, Vol. 13, Issue 03, 030503, (May 2008) https://doi.org/10.1117/1.2937469
Open Access
TOPICS: Mid-IR, Absorption, Reflectivity, FT-IR spectroscopy, Foam, Infrared radiation, Virtual point source, Tissues, Refractive index, Reflectance spectroscopy
Ang Li, Jing Liu, Vaya Tanamai, Richard Kwong, Albert Cerussi, Bruce Tromberg
Journal of Biomedical Optics, Vol. 13, Issue 03, 030504, (May 2008) https://doi.org/10.1117/1.2937471
Open Access
TOPICS: Tumors, Line scan image sensors, Optical properties, Breast, Tissue optics, Finite element methods, Ultrasonography, Absorption, Diffuse optical spectroscopy, Reflectivity
Christine Fleming, Crystal Ripplinger, Bryan Webb, Igor Efimov, Andrew Rollins
Journal of Biomedical Optics, Vol. 13, Issue 03, 030505, (May 2008) https://doi.org/10.1117/1.2937470
Open Access
TOPICS: Optical coherence tomography, 3D image processing, Heart, Algorithm development, Structured optical fibers, Image filtering, Tissues, Image processing, Solids, Image analysis
Journal of Biomedical Optics, Vol. 13, Issue 03, 030506, (May 2008) https://doi.org/10.1117/1.2938700
Open Access
TOPICS: Digital signal processing, Optical coherence tomography, Endoscopes, Signal processing, Microelectromechanical systems, 3D image processing, Image processing, Coherence imaging, 3D acquisition, Signal detection
Tammy Lee, Elma Baron, Thomas Foster
Journal of Biomedical Optics, Vol. 13, Issue 03, 030507, (May 2008) https://doi.org/10.1117/1.2939068
Open Access
TOPICS: Luminescence, Photodynamic therapy, Reflectivity, Spectroscopy, Clinical trials, Absorption, Lymphoma, Fluorescence spectroscopy, Tissue optics, Control systems
Special Section on Visible Fluorescent Proteins
Journal of Biomedical Optics, Vol. 13, Issue 03, 031201, (May 2008) https://doi.org/10.1117/1.2939070
Open Access
Richard Day, Fred Schaufele
Journal of Biomedical Optics, Vol. 13, Issue 03, 031202, (May 2008) https://doi.org/10.1117/1.2939093
Open Access
TOPICS: Proteins, Fluorescent proteins, Fluorescence resonance energy transfer, Green fluorescent protein, Luminescence, Cell biology, Ocean optics, Organisms, Microscopy, Physiology
Richard Day, Cynthia Booker, Ammasi Periasamy
Journal of Biomedical Optics, Vol. 13, Issue 03, 031203, (May 2008) https://doi.org/10.1117/1.2939094
Open Access
TOPICS: Fluorescence resonance energy transfer, Proteins, Venus, Luminescence, Fluorescent proteins, Microscopy, Resonance energy transfer, Sensors, Microscopes, Quantum efficiency
Srinagesh Koushik, Steven Vogel
Journal of Biomedical Optics, Vol. 13, Issue 03, 031204, (May 2008) https://doi.org/10.1117/1.2940367
Open Access
TOPICS: Luminescence, Venus, Fluorescence resonance energy transfer, Proteins, Fluorescence anisotropy, Anisotropy, Refractive index, Resonance energy transfer, Photons, Fluorescence lifetime imaging
Birgit Hoffmann, Thomas Zimmer, Nikolaj Klöcker, Laimonas Kelbauskas, Karsten Koenig, Klaus Benndorf, Christoph Biskup
Journal of Biomedical Optics, Vol. 13, Issue 03, 031205, (May 2008) https://doi.org/10.1117/1.2937829
Open Access
TOPICS: Luminescence, Proteins, Fluorescence resonance energy transfer, Fluorescent proteins, Streak cameras, Capillaries, Green fluorescent protein, Confocal microscopy, Molecules, Microscopes
Hewang Li, Hui-Fang Li, Robin Felder, Ammasi Periasamy, Pedro Jose
Journal of Biomedical Optics, Vol. 13, Issue 03, 031206, (May 2008) https://doi.org/10.1117/1.2943286
Open Access
TOPICS: Fluorescence resonance energy transfer, Plasma, Receptors, Proteins, Microscopy, Luminescence, Lithium, Image processing, Control systems, Confocal microscopy
Eric Kofoed, Martin Guerbadot, Fred Schaufele
Journal of Biomedical Optics, Vol. 13, Issue 03, 031207, (May 2008) https://doi.org/10.1117/1.2940366
Open Access
TOPICS: Fluorescence resonance energy transfer, Calibration, Luminescence, Proteins, Energy transfer, Fluorescent proteins, Receptors, Resonance energy transfer, Molecules, Data modeling
Marina Mikhailova, Jonathan Blansett, Sandi Jacobi, Philip Mayeux, Lawrence Cornett
Journal of Biomedical Optics, Vol. 13, Issue 03, 031208, (May 2008) https://doi.org/10.1117/1.2943285
Open Access
TOPICS: Receptors, Fluorescence resonance energy transfer, Proteins, Autoregressive models, Calcium, Confocal microscopy, Interfaces, Image fusion, Luminescence, Fluorescent proteins
Journal of Biomedical Optics, Vol. 13, Issue 03, 031209, (May 2008) https://doi.org/10.1117/1.2937830
Open Access
TOPICS: Fluorescence resonance energy transfer, Luminescence, Cell death, Multichannel imaging systems, Imaging systems, Green fluorescent protein, Proteins, Fluorescent proteins, Image fusion, Optoelectronics
Nicole McGrath, Margarida Barroso
Journal of Biomedical Optics, Vol. 13, Issue 03, 031210, (May 2008) https://doi.org/10.1117/1.2939417
Open Access
TOPICS: Fluorescence resonance energy transfer, Molecules, Image processing, Quantum dots, Confocal microscopy, Energy transfer, Luminescence, Image filtering, Imaging spectroscopy, Contamination
Kelly Rogers, Jean-Rene Martin, Olivier Renaud, Eric Karplus, Marie-Anne Nicola, Marie Nguyen, Sandrine Picaud, Spencer Shorte, Philippe Brulet
Journal of Biomedical Optics, Vol. 13, Issue 03, 031211, (May 2008) https://doi.org/10.1117/1.2937236
Open Access
TOPICS: Calcium, Bioluminescence, Electron multiplying charge coupled devices, Sensors, Green fluorescent protein, Microscopes, Signal detection, Luminescence, Acquisition tracking and pointing, Video
Guillaume Lessard, Satoshi Habuchi, James Werner, Peter Goodwin, Frans De Schryver, Johan Hofkens, Mircea Cotlet
Journal of Biomedical Optics, Vol. 13, Issue 03, 031212, (May 2008) https://doi.org/10.1117/1.2937477
Open Access
TOPICS: Chromophores, Luminescence, Green fluorescent protein, Fluorescence resonance energy transfer, Proteins, Fluorescence correlation spectroscopy, Fluorescent proteins, Fluorescence spectroscopy, Molecules, Diffusion
Wataru Watanabe, Sachhiro Matsunaga, Tsunehito Higashi, Kiichi Fukui, Kazuyoshi Itoh
Journal of Biomedical Optics, Vol. 13, Issue 03, 031213, (May 2008) https://doi.org/10.1117/1.2939401
Open Access
TOPICS: Luminescence, Femtosecond phenomena, Laser ablation, In vivo imaging, Confocal microscopy, Green fluorescent protein, Oscillators, Molecules, Microscopes, Fluorescent proteins
Journal of Biomedical Optics, Vol. 13, Issue 03, 031214, (May 2008) https://doi.org/10.1117/1.2940576
Open Access
TOPICS: Scanning laser ophthalmoscopy, Proteins, Diffusion, Fluorescence correlation spectroscopy, Molecules, Fluorescent proteins, Luminescence, Molecular interactions, Imaging spectroscopy, In vitro testing
Gabriele Malengo, Annapaola Andolfo, Nicolai Sidenius, Enrico Gratton, Moreno Zamai, Valeria Caiolfa
Journal of Biomedical Optics, Vol. 13, Issue 03, 031215, (May 2008) https://doi.org/10.1117/1.2940570
Open Access
TOPICS: Proteins, Diffusion, Fluorescence correlation spectroscopy, Receptors, Photon counting, Luminescence, Molecules, Biological research, Molecular spectroscopy, Statistical analysis
Laurent Cognet, Catherine Tardin, Marie-Laure Negrier, Christelle Breillat, Francoise Coussen, Daniel Choquet, Brahim Lounis
Journal of Biomedical Optics, Vol. 13, Issue 03, 031216, (May 2008) https://doi.org/10.1117/1.2940600
Open Access
TOPICS: Proteins, Molecules, Green fluorescent protein, Molecular aggregates, Monte Carlo methods, Fluorescent proteins, Photons, Luminescence, Microscopy, Computer simulations
Journal of Biomedical Optics, Vol. 13, Issue 03, 031217, (May 2008) https://doi.org/10.1117/1.2942373
Open Access
TOPICS: Gold, Luminescence, Fluorescence lifetime imaging, Multiphoton microscopy, Particles, Nanoparticles, Biomedical optics, Cancer, Optical properties, Imaging systems
Journal of Biomedical Optics, Vol. 13, Issue 03, 031218, (May 2008) https://doi.org/10.1117/1.2937212
Open Access
TOPICS: Luminescence, Refractive index, Green fluorescent protein, Proteins, Fluorescence lifetime imaging, Interfaces, Confocal microscopy, Glasses, Prisms, Molecules
V. Krishnan Ramanujan, Brian Herman
Journal of Biomedical Optics, Vol. 13, Issue 03, 031219, (May 2008) https://doi.org/10.1117/1.2928154
Open Access
TOPICS: Cancer, Glucose, Mode conditioning cables, Luminescence, In vivo imaging, Fluorescent proteins, Tumors, Imaging systems, Data acquisition, Nonlinear optics
Paolo Provenzano, Curtis Rueden, Steven Trier, Long Yan, Suzanne Ponik, David Inman, Patricia Keely, Kevin Eliceiri
Journal of Biomedical Optics, Vol. 13, Issue 03, 031220, (May 2008) https://doi.org/10.1117/1.2940365
Open Access
TOPICS: Collagen, Tumors, Second-harmonic generation, Fluorescence lifetime imaging, Visualization, Optical imaging, Luminescence, 3D image processing, Cancer, Imaging systems
Review Papers
Yasuyuki Kakihana M.D., Akira Matsunaga, Tomotsugu Yasuda, Toru Imabayashi, Yuichi Kanmura, Mamoru Tamura
Journal of Biomedical Optics, Vol. 13, Issue 03, 033001, (May 2008) https://doi.org/10.1117/1.2940583
Open Access
TOPICS: Near infrared spectroscopy, Brain, Arteries, Oxygen, Surgery, Traumatic brain injury, Blood, Hypoxia, Blood circulation, Tissues
Research Papers
Matthew Brenner, Kelly Kreuter, Johnny Ju M.D., Sari Mahon, Lillian Tseng M.D., David Mukai, Tanya Burney, Shuguang Guo, Jiangping Su, Andrew Tran M.D., Andriy Batchinsky, Leopoldo Cancio M.D., Navneet Narula, Zhongping Chen
Journal of Biomedical Optics, Vol. 13, Issue 03, 034001, (May 2008) https://doi.org/10.1117/1.2939400
Open Access
TOPICS: Optical coherence tomography, Injuries, In vivo imaging, Fiber optics, Blood, Statistical analysis, GRIN lenses, Image resolution, Veins, Instrument modeling
Journal of Biomedical Optics, Vol. 13, Issue 03, 034002, (May 2008) https://doi.org/10.1117/1.2931079
Open Access
TOPICS: Optical coherence tomography, Fourier transforms, Principal component analysis, Tissues, Image classification, Binary data, Biomedical optics, Data modeling, Coherence (optics), Detection and tracking algorithms
Chenyang Xu, Joseph Schmitt, Stephane Carlier, Renu Virmani
Journal of Biomedical Optics, Vol. 13, Issue 03, 034003, (May 2008) https://doi.org/10.1117/1.2927464
Open Access
TOPICS: Optical coherence tomography, Signal attenuation, Backscatter, Tissues, Arteries, Tissue optics, Imaging systems, Optical properties, Natural surfaces, Optical fibers
A. Brazhe, N. Brazhe, G. Maksimov, P. Ignatyev, A. Rubin, E. Mosekilde, Olga Sosnovtseva
Journal of Biomedical Optics, Vol. 13, Issue 03, 034004, (May 2008) https://doi.org/10.1117/1.2937213
Open Access
TOPICS: Neurons, Microscopy, Wavelets, Calcium, Mirrors, Objectives, Visualization, Refractive index, Plasma, Microscopes
William Warger II, Judith Newmark, Carol Warner, Charles DiMarzio
Journal of Biomedical Optics, Vol. 13, Issue 03, 034005, (May 2008) https://doi.org/10.1117/1.2937468
Open Access
TOPICS: Digital image correlation, Microscopy, Imaging systems, Luminescence, Refraction, Biomedical optics, Confocal microscopy, Sensing systems, In vitro testing, Optical microscopy
Guoliang Huang, Cheng Deng, Jiang Zhu, Shukuan Xu, Chao Han, Xiaobo Song, Xiaoyong Yang
Journal of Biomedical Optics, Vol. 13, Issue 03, 034006, (May 2008) https://doi.org/10.1117/1.2939402
Open Access
TOPICS: Imaging systems, Digital imaging, Scanners, Objectives, Optical scanning systems, Biomedical optics, Image processing, Signal detection, Proteins, Spectral resolution
Georgina To'a Salazar, Yuli Wang, Christopher Sims, Mark Bachman, Guann-pyng Li, Nancy Allbritton
Journal of Biomedical Optics, Vol. 13, Issue 03, 034007, (May 2008) https://doi.org/10.1117/1.2937475
Open Access
TOPICS: Pulsed laser operation, Laser energy, Glasses, Laser damage threshold, Plasma, Laser applications, Laser marking, Laser cutting, Interfaces, Laser scattering
Cheng Zhong, Eric Tkaczyk, Thommey Thomas, Jing Ye, Andrzej Myc, Anna Bielinska, Zhengyi Cao, Istvan Majoros, Balazs Keszler, James Baker Jr., Theodore Norris
Journal of Biomedical Optics, Vol. 13, Issue 03, 034008, (May 2008) https://doi.org/10.1117/1.2931077
Open Access
TOPICS: Luminescence, Flow cytometry, In vivo imaging, In vitro testing, Blood, Blood vessels, Particles, Femtosecond phenomena, Ear, Capillaries
Brian Pogue, Chao Sheng, Juan Manuel Benavides, David Forcione, Bill Puricelli, Norman Nishioka M.D., Tayyaba Hasan
Journal of Biomedical Optics, Vol. 13, Issue 03, 034009, (May 2008) https://doi.org/10.1117/1.2937476
Open Access
TOPICS: Luminescence, Photodynamic therapy, Esophagus, Tissue optics, Signal detection, Tissues, Liquids, In vivo imaging, Calibration, Oxygen
Seonkyung Lee, Leyun Zhu, Ahmed Minhaj, Michael Hinds, Danthu Vu, David Rosen, Steven Davis, Tayyaba Hasan
Journal of Biomedical Optics, Vol. 13, Issue 03, 034010, (May 2008) https://doi.org/10.1117/1.2927465
Open Access
TOPICS: Oxygen, Semiconductor lasers, Photodynamic therapy, Picosecond phenomena, Pulsed laser operation, Tumors, Diodes, Molecular lasers, Data acquisition, Luminescence
Journal of Biomedical Optics, Vol. 13, Issue 03, 034011, (May 2008) https://doi.org/10.1117/1.2937478
Open Access
TOPICS: Ultrasonography, Cavitation, Transducers, Acoustic emission, Laser tissue interaction, Acoustics, Pulsed laser operation, Wave propagation, Signal detection
Thomas Fritsch, Maarten van Herpen, Golo von Basum, Peter Hering, Manfred Mürtz
Journal of Biomedical Optics, Vol. 13, Issue 03, 034012, (May 2008) https://doi.org/10.1117/1.2937215
Open Access
TOPICS: Carbon monoxide, Glucose, Hydrogen, Sensors, Laser spectroscopy, Blood, Spectroscopy, Absorption, Gas lasers, Nitrogen
Seng Teh, Wei Zheng, Khek Yu Ho, Ming Teh, Khay Guan Yeoh, Zhiwei Huang
Journal of Biomedical Optics, Vol. 13, Issue 03, 034013, (May 2008) https://doi.org/10.1117/1.2939406
Open Access
TOPICS: Raman spectroscopy, Tissues, Cancer, Diagnostics, Data modeling, Tissue optics, Algorithm development, Tumor growth modeling, Near infrared, Pathology
Cemre Kortun, Yasser Hijazi, Dizem Arifler
Journal of Biomedical Optics, Vol. 13, Issue 03, 034014, (May 2008) https://doi.org/10.1117/1.2939405
Open Access
TOPICS: Finite-difference time-domain method, Scattering, Tissues, Monte Carlo methods, Reflectivity, Sensors, Photodetectors, Photon transport, Refractive index, Computer simulations
Changfang Zhu, Gregory Palmer, Tara Breslin M.D., Josephine Harter M.D., Nirmala Ramanujam
Journal of Biomedical Optics, Vol. 13, Issue 03, 034015, (May 2008) https://doi.org/10.1117/1.2931078
Open Access
TOPICS: Tissues, Luminescence, Breast, Scattering, Absorption, Diffuse reflectance spectroscopy, Breast cancer, Collagen, Tumor growth modeling, Monte Carlo methods
Paul Martinsen, Jean-Luc Charlier, Tim Wilcox, Guy Warman, Andrew McGlone, Rainer Kunnemeyer
Journal of Biomedical Optics, Vol. 13, Issue 03, 034016, (May 2008) https://doi.org/10.1117/1.2943191
Open Access
TOPICS: Blood, Oxygen, Absorption, Absorbance, Temperature metrology, Plasma, Scattering, Optical testing, Transducers, Transmittance
Journal of Biomedical Optics, Vol. 13, Issue 03, 034017, (May 2008) https://doi.org/10.1117/1.2940587
Open Access
TOPICS: Hemodynamics, Near infrared spectroscopy, Sensors, Brain, Signal detection, Head, Visualization, Interference (communication), Optical fibers, Monte Carlo methods
Cristina Kurachi D.D.S., Carla Fontana D.D.S., Luiz Rosa, Vanderlei Bagnato D.D.S.
Journal of Biomedical Optics, Vol. 13, Issue 03, 034018, (May 2008) https://doi.org/10.1117/1.2937214
Open Access
TOPICS: Luminescence, Cancer, Tongue, Fluorescence spectroscopy, Diagnostics, Tumor growth modeling, Tissues, Spectroscopy, Animal model studies, Tissue optics
Journal of Biomedical Optics, Vol. 13, Issue 03, 034019, (May 2008) https://doi.org/10.1117/1.2943156
Open Access
TOPICS: Cornea, Collagen, Second-harmonic generation, Wound healing, Signal detection, Multiphoton microscopy, Surgery, Biological research, Medicine, Tissues
Jonathan Liu, Michael Mandella, James Crawford M.D., Christopher Contag, Thomas Wang, Gordon Kino
Journal of Biomedical Optics, Vol. 13, Issue 03, 034020, (May 2008) https://doi.org/10.1117/1.2939428
Open Access
TOPICS: Scattering, Mirrors, Light scattering, Confocal microscopy, Tissue optics, Monte Carlo methods, Tissues, Luminescence, Microscopes, Esophagus
Julian Borejdo, Priya Muthu, John Talent, Zygmunt Gryczynski, Nils Calander, Irina Akopova, Tanya Shtoyko, Ignacy Gryczynski
Journal of Biomedical Optics, Vol. 13, Issue 03, 034021, (May 2008) https://doi.org/10.1117/1.2938689
Open Access
TOPICS: Molecules, Glasses, Luminescence, Nanoparticles, Cameras, Silver, Objectives, Photons, Proteins, Signal to noise ratio
Russell Connally, James Piper
Journal of Biomedical Optics, Vol. 13, Issue 03, 034022, (May 2008) https://doi.org/10.1117/1.2928169
Open Access
TOPICS: Luminescence, Microscopes, Signal to noise ratio, Light emitting diodes, Cameras, Ultraviolet light emitting diodes, Sensors, Europium, Solid state electronics, Optical filters
Journal of Biomedical Optics, Vol. 13, Issue 03, 034023, (May 2008) https://doi.org/10.1117/1.2927466
Open Access
TOPICS: Photoacoustic spectroscopy, Oxygen, Absorption, Pulsed laser operation, Luminescence, Signal detection, Receivers, Tissue optics, Molecules, Ultrasonography
Jignesh Shah, Suhyun Park, Salavat Aglyamov, Timothy Larson, Li Ma, Konstantin Sokolov, Keith Johnston, Thomas Milner, Stanislav Emelianov
Journal of Biomedical Optics, Vol. 13, Issue 03, 034024, (May 2008) https://doi.org/10.1117/1.2940362
Open Access
TOPICS: Photoacoustic spectroscopy, Ultrasonography, Temperature metrology, Tissue optics, Photoacoustic imaging, Laser therapeutics, Thermography, Tumors, Nanoparticles, Tissues
Journal of Biomedical Optics, Vol. 13, Issue 03, 034025, (May 2008) https://doi.org/10.1117/1.2942374
Open Access
TOPICS: Teeth, Minerals, Dental caries, Modulation, Luminescence, In vitro testing, Radiometry, Polishing, Signal attenuation, Thermography
Xuefeng Yao, P. Wang, R. Cai
Journal of Biomedical Optics, Vol. 13, Issue 03, 034026, (May 2008) https://doi.org/10.1117/1.2928126
Open Access
TOPICS: Bone, Speckle, Head, Speckle pattern, Tissues, Digital image correlation, Digital recording, Biological research, Digital Light Processing, CCD cameras
Journal of Biomedical Optics, Vol. 13, Issue 03, 034027, (May 2008) https://doi.org/10.1117/1.2940360
Open Access
TOPICS: Telescopes, Mirrors, Eye, Beam splitters, Objectives, Optical instrument design, Eyeglasses, Prototyping, Visualization, Off axis mirrors
Errata
Min Xu, Tao Wu, Jianan Qu
Journal of Biomedical Optics, Vol. 13, Issue 03, 039801, (May 2008) https://doi.org/10.1117/1.2937889
Open Access
Shai Ashkenazi, Shen-Wen Huang, Thomas Horvath, Yong-Eun Koo, Raoul Kopelman
Journal of Biomedical Optics, Vol. 13, Issue 03, 039802, (May 2008) https://doi.org/10.1117/1.2943294
Open Access
Jian Lu, Francisco Pereira, Scott Fraser, Morteza Gharib
Journal of Biomedical Optics, Vol. 13, Issue 03, 039803, (May 2008) https://doi.org/10.1117/1.2953560
Open Access
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